KMINE Literature Reports

KMINE Literature Reports summarize the relevant literature for bacteria, genes, metabolites pathways, drugs, phenotypes and diseases, or other biomedical terms. All automated literature reports are based on PubMed abstracts and are generated as interactive HTML pages.

Examples of KMINE Literature Reports:

Multi omics gut set
A mixed omics set of concepts related to gut microbiome including organisms, pathways and metabolites.
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Genes & ALS
A set of 10 genes related to general inflammation and to the disease Amyotrophic Lateral Sclerosis.
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Microbes & skin microbiome
A set of micro-organisms related to the skin microbiome.
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TenWise has a large number of precompiled literature reports, created on basis of external concept sets. These include:

  • 4440 reports for regulated gene sets from the molecular signature database (MSigDB).
  • 2417 reports for phenotype & disease related genes sets from the HPO database.
  • 793 reports for metabolites from a set of curated metabolic pathways.
  • 654 reports for human pathways from WikiPathways.
  • 35 custom reports with mixed type concepts gathered by experts, addressing a specific biological field. Examples of these are shown below.

Precompiled literature reports from other external sources can be added on request.

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